Hotels in Junction City

Free cancellation options if plans change

Unlock travel rewards with One Key

Save more with Member Prices

Check prices for these dates

Where to stay in Junction City?

Madison Inn Lodge

Madison Inn Lodge
2.5 star property
Fredericktown
7.6 out of 10, Good, (303 reviews)
Enjoy tranquil surroundings at this well-maintained Fredericktown lodge featuring a seasonal outdoor pool. Complimentary weekend continental breakfast, WiFi, and parking enhance your stay. Located within driving distance of Arcadia Valley Station for regional exploration.
$88 nightly
The price is $96
Jun 18 - Jun 19
Total with taxes and fees
Madison Inn Lodge

Baymont Inn and Suites by Wyndham Farmington, MO

Baymont Inn and Suites by Wyndham Farmington, MO
2.5 star property
Farmington
8.0 out of 10, Very Good, (1,003 reviews)
Unwind in this quiet hotel where comfortable beds ensure a restful sleep. The 24-hour fitness center and seasonal outdoor pool add vacation vibes, while free breakfast and parking enhance value. Helpful staff and clean rooms earn top marks from travelers.
$58 nightly
The price is $64
Jul 5 - Jul 6
Total with taxes and fees
Baymont Inn and Suites by Wyndham Farmington, MO

Super 8 by Wyndham Perryville

Super 8 by Wyndham Perryville
2.0 star property
Perryville
8.4 out of 10, Very Good, (1,004 reviews)
Wake up to a complimentary meal at this friendly motel in Perryville. Energize with a workout in the 24-hour fitness center or take a refreshing dip in the indoor pool. Near Perryville Country Club and Saint Marys Lake with free WiFi and parking.
$70 nightly
The price is $80
Jun 23 - Jun 24
Total with taxes and fees
Super 8 by Wyndham Perryville

Crown Pointe Lodge, BW Signature Collection

Crown Pointe Lodge, BW Signature Collection
2.5 star property
Farmington
9.0 out of 10, Wonderful, (630 reviews)
Tee off at the 18-hole course, then unwind in the indoor pool and hot tub at this welcoming Farmington escape. Near Crown Pointe Golf Club, this hotel offers free breakfast, WiFi, parking, and a fitness center with terrace views.
$102 nightly
The price is $111
Jun 28 - Jun 29
Total with taxes and fees
Crown Pointe Lodge, BW Signature Collection

Quality Inn Farmington

Quality Inn Farmington
2.5 star property
Farmington
7.6 out of 10, Good, (891 reviews)
Nestled in Farmington with easy access to Wilson Rozier and Bicentennial Parks, this hotel provides free breakfast, WiFi, and parking. Enjoy the indoor pool after a day on nearby trails. Guests rave about clean rooms and helpful staff.
$67 nightly
The price is $73
Jul 12 - Jul 13
Total with taxes and fees
Quality Inn Farmington

Microtel Inn & Suites by Wyndham Sainte Genevieve

Microtel Inn & Suites by Wyndham Sainte Genevieve
2.5 star property
Ste Genevieve
8.8 out of 10, Excellent, (640 reviews)
Experience tranquil stays in Ste Genevieve, where clean rooms and helpful staff earn top marks. Explore nearby Historic District, then enjoy free breakfast, WiFi and parking. This quiet hotel provides the perfect base for discovering local museums.
$85 nightly
The price is $94
Jun 18 - Jun 19
Total with taxes and fees
Microtel Inn & Suites by Wyndham Sainte Genevieve

Hampton Inn Farmington

Hampton Inn Farmington
2.5 star property
Farmington
8.8 out of 10, Excellent, (561 reviews)
Morning swims in the indoor pool or workouts at the 24-hour fitness center start your day right. Located near Farmington Mineral Area Shopping Center and Dean Danieley Park, this hotel offers free breakfast, WiFi, and parking. Guests consistently praise the helpful staff.
$107 nightly
The price is $116
Jun 28 - Jun 29
Total with taxes and fees
Hampton Inn Farmington

Holiday Inn Express & Suites Perryville by IHG

Holiday Inn Express & Suites Perryville by IHG
2.5 star property
Perryville
9.2 out of 10, Wonderful, (594 reviews)
Close to Perryville Country Club and Saint Marys Lake, this hotel offers free breakfast, WiFi, and parking. Guests love the helpful staff and clean rooms. Take a morning swim or workout at any hour during your business trip or leisure getaway.
$101 nightly
The price is $116
Jun 21 - Jun 22
Total with taxes and fees
Holiday Inn Express & Suites Perryville by IHG

Super 8 by Wyndham Farmington

Super 8 by Wyndham Farmington
2.0 star property
Farmington
8.0 out of 10, Very Good, (656 reviews)
Enjoy free breakfast and WiFi at this welcoming motel with a seasonal outdoor pool. Located close to Farmington Mineral Area Shopping Center and Dean Danieley Park, guests praise the helpful staff who ensure a comfortable stay.
$62 nightly
The price is $68
Jun 28 - Jun 29
Total with taxes and fees
Super 8 by Wyndham Farmington

Holiday Inn Express & Suites Farmington by IHG

Holiday Inn Express & Suites Farmington by IHG
2.5 star property
Farmington
8.6 out of 10, Excellent, (421 reviews)
Escape to this Farmington hotel offering an indoor pool for year-round swimming and complimentary breakfast to start your day. Close to Mineral Area Shopping Center and Dean Danieley Park, the friendly staff gets top marks from guests. Free WiFi and parking complete the experience.
$118 nightly
The price is $128
Jul 12 - Jul 13
Total with taxes and fees
Holiday Inn Express & Suites Farmington by IHG

Shepherd Mountain Inn

Shepherd Mountain Inn
2.5 star property
Ironton
9.2 out of 10, Wonderful, (315 reviews)
Shepherd Mountain Inn offers tranquil accommodations minutes from Arcadia Valley Station. Unwind at the on-site restaurant and bar after exploring the nearby bike park and historic Pilot Knob site. Guests praise the attentive staff and pristine rooms.
$137 nightly
The price is $150
Jun 22 - Jun 23
Total with taxes and fees
Shepherd Mountain Inn

Super 8 by Wyndham Bonne Terre

Super 8 by Wyndham Bonne Terre
2.0 star property
Bonne Terre
7.0 out of 10, Good, (565 reviews)
Wake up to free breakfast before exploring Bonne Terre Mine or diving into the indoor pool. Located near hiking trails and St. Francois State Park, this hotel provides comfortable rooms with free WiFi and parking.
$58 nightly
The price is $64
Jun 23 - Jun 24
Total with taxes and fees
Super 8 by Wyndham Bonne Terre

EC Reed's Mercantile and Hotel

EC Reed's Mercantile and Hotel
3.0 star property
Marble Hill
9.6 out of 10, Exceptional, (99 reviews)
Adventure seekers can explore nearby hiking trails, kayaking, and rafting, then return to this welcoming hotel. Enjoy free continental breakfast, WiFi, and parking, plus exceptional service from the staff that guests consistently praise.
$93 nightly
The price is $101
Jun 19 - Jun 20
Total with taxes and fees
EC Reed's Mercantile and Hotel

Arcadia Academy

Arcadia Academy
3.0 star property
Arcadia
9.4 out of 10, Exceptional, (13 reviews)
Surrounded by scenic landscapes, this B&B offers a complimentary breakfast in its inviting restaurant. Unwind at the stylish bar, stroll through the garden, or relax on the terrace after exploring nearby golf and hiking attractions.
$144 nightly
The price is $156
Jun 22 - Jun 23
Total with taxes and fees
Arcadia Academy

Fort Davidson Hotel

Fort Davidson Hotel
2.5 star property
Ironton
9.2 out of 10, Wonderful, (179 reviews)
Escape to this welcoming hotel featuring an outdoor pool, free parking, and convenient train station pickup. Explore nearby Fort Davidson State Historic Site and Battle of Pilot Knob Museum, all while enjoying complimentary WiFi throughout your stay.
$125 nightly
The price is $137
Jun 21 - Jun 22
Total with taxes and fees
Fort Davidson Hotel

Urban Lofts

Urban Lofts
3.0 star property
Perryville
9.4 out of 10, Exceptional, (22 reviews)
Stylish lofts near Feltz Street Park combine comfort with convenience. Each apartment features a full kitchen, washer/dryer, and plush memory foam beds. Enjoy free WiFi and parking while exploring nearby Perryville Country Club attractions.
$295 nightly
The price is $338
Jun 18 - Jun 19
Total with taxes and fees
Urban Lofts

Days Inn by Wyndham Perryville

Days Inn by Wyndham Perryville
2.0 star property
Perryville
6.8 out of 10, (439 reviews)
This countryside hotel offers a refreshing seasonal outdoor pool plus convenient freebies including WiFi, parking, and daily on-the-go breakfast. Located near Saint Marys Lake, it provides easy access to local attractions while serving as a practical business-friendly base.
$67 nightly
The price is $76
Jun 22 - Jun 23
Total with taxes and fees
Days Inn by Wyndham Perryville
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Check out reviews of Junction City hotels guests love

Frequently asked questions

How much does a hotel room cost in Junction City?
You can choose a great hotel in Junction City from $64 with properties to suit all budgets and needs. To find an affordable hotel in Junction City that meets all of your requirements, just apply filters on Hotels.com and sort hotels by "Price: low to high".
How can I find deals and earn rewards at Junction City hotels?
Discover great deals on Junction City hotel stays with Hotels.com. It's also a good idea to look at hotel prices mid-week or during the low season as you're likely to find off-peak deals. If it's a spontaneous trip, check out our last-minute deals on Junction City hotels.
Can I book Junction City hotels with free cancellation?
To book a refundable Junction City hotel on Hotels.com, just filter hotels by "Property cancellation options" and select "Fully refundable property". Many hotels offer free cancellation, so you can receive a refund if you need to cancel. Some hotels do require cancelling more than 24 hours before check-in, so double-check your booking beforehand.
What hotels do travelers like in Junction City?
Guests like Madison Inn Lodge.
Can I book a refundable accommodation in Junction City?
If you need the flexibility to change your travel plans to Junction City, most hotels offer refundable* bookable rates. You can find these properties by searching our site and using the "fully refundable" filter to narrow the results down.
What will the weather in Junction City be like during my vacation?
The warmest months in Junction City are usually July and August with an average temp of 75°F. January and February are the chilliest months when the average temp is 38°F. The rainiest months are April and May.
Why should I book my Junction City hotel with Hotels.com?
There are plenty of reasons to book your Junction City travel with us: our free cancellations on selected hotels gives you the flexibility you're looking for, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™* on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.

Find out more about Junction City

Discover Junction City: Where Lakeside Serenity Meets Cultural Vibrancy

Nestled in the heart of Missouri, Junction City is a charming gateway for travelers seeking a blend of nature and small-town charm. Just a stone's throw from stunning lakes, it offers outdoor adventures from fishing to hiking. Explore its quaint downtown area, where local shops and eateries reflect the community's warm hospitality. Nearby, Junction City, Kansas, adds a dash of vibrant culture and history, making it an ideal stop for those seeking a unique experience. Whether you’re looking for a peaceful retreat or a base for exploring the surrounding landscapes, Junction City promises memorable moments in a welcoming atmosphere.

Discover great hotels in Junction City

Junction City, Missouri, offers a variety of hotel accommodations ranging from budget-friendly options to comfortable mid-range stays. You'll find well-appointed rooms in several star-rated hotels, along with affordable choices for those looking to save. For a unique experience, consider local campgrounds that provide a cozy outdoor stay. Here are some of our travelers' favorite hotels in Junction City:

  1. Madison Inn LodgeOpens in a new window: Madison Inn Lodge is a charming 2.5-star motel that offers a delightful stay for travelers seeking a pet-friendly experience. With business-themed amenities, this property ensures a comfortable environment for those looking to combine work with relaxation. Its welcoming atmosphere and well-equipped facilities create a smooth journey for visitors. Positive sentiments highlight the ease of access for pets, making it a perfect choice for adventurous travelers who appreciate the convenience of traveling with their furry companions.
  2. Baymont Inn and Suites by Wyndham FarmingtonOpens in a new window: Baymont Inn and Suites by Wyndham Farmington is a stylish 2.5-star hotel designed for travelers who value comfort and family-friendly amenities. This property shines with its extensive business services, including a 24-hour business center and meeting rooms, making it ideal for those on work-related trips. The thoughtful inclusion of child-friendly amenities adds to its appeal, ensuring a memorable stay. Guests frequently express satisfaction with the accommodating atmosphere and the quality of services provided, reinforcing its reputation as a prime choice for those balancing work and leisure.
  3. Quality Inn FarmingtonOpens in a new window: Quality Inn Farmington is an inviting 2.5-star hotel that caters to adventurous travelers seeking both business and recreational experiences. With a focus on adventure sports and various outdoor activities, this property provides a unique blend of comfort and excitement. The availability of a 24-hour business center ensures that guests can seamlessly transition between work and leisure. Reviewers consistently appreciate the engaging atmosphere and the opportunity to explore nearby hiking and biking trails, making it an excellent choice for those looking to enrich their travels with memorable experiences.

Top locations to stay in Junction City

Fredericktown, Marquand, and Knob Lick are all appealing areas to stay when visiting Junction City, Missouri. Fredericktown offers a charming downtown with family-friendly attractions, while Marquand features scenic parks and outdoor activities. Knob Lick provides a quaint atmosphere with local shops. For first-time visitors, Fredericktown is best suited due to its vibrant community and convenient amenities.

  1. FredericktownOpens in a new window: Fredericktown is a charming destination that offers a warm, family-friendly atmosphere. Known for its beautiful parks and outdoor spaces, it’s perfect for leisurely strolls or picnics. The town hosts various local events throughout the year, promoting community spirit and showcasing local artisans. Nature enthusiasts will appreciate the nearby trails and scenic landscapes, ideal for hiking and exploring. Fredericktown’s quaint downtown area features unique shops and local boutiques where you can discover handmade crafts and souvenirs, making it a great spot for those seeking a taste of local culture.
  2. MarquandOpens in a new window: Marquand is a hidden gem that embraces the essence of small-town America. This peaceful locale offers a chance to unwind and connect with nature, with nearby hiking trails and outdoor recreational opportunities. The community is known for its friendly residents and inviting atmosphere, making it an ideal spot for families or those looking for a quiet getaway. Local events often highlight regional crafts and foods, providing a genuine experience of the area's culture. Plus, the surrounding countryside offers stunning views and a tranquil escape from the hustle and bustle of city life.
  3. Knob LickOpens in a new window: Knob Lick is a quaint, off-the-beaten-path destination that captures the charm of rural Missouri. It’s perfect for travelers who enjoy a slower pace and appreciate the beauty of nature. The area is rich in scenic landscapes, ideal for outdoor activities like hiking and birdwatching. Knob Lick’s close-knit community often engages in local events that celebrate their heritage, giving visitors a taste of authentic local life. If you’re seeking a peaceful retreat surrounded by nature, this is the place to relax and recharge.

Things to do in Junction City

Junction City boasts stunning lakes surrounded by lush forests and rolling hills, perfect for outdoor enthusiasts. Enjoy boating, fishing, or hiking scenic trails by day, then unwind with a night stroll along the waterfront. With vibrant local shops and inviting parks, it’s an ideal getaway for relaxation and recreation.

  • Madison County CourthouseOpens in a new window – Step into history at this majestic Civic Government Building. The architecture showcases the charm of a bygone era, making it a perfect spot for photography enthusiasts and history lovers alike. Imagine the stories the walls could tell as you explore its grand interiors.
  • Millstream Gardens Conservation AreaOpens in a new window – Escape to nature at this serene preserve. Enjoy peaceful walks along scenic trails that wind through lush landscapes, and don’t forget to bring your camera to capture the beautiful lake views. It’s an ideal spot for a picnic or simply soaking in the tranquility of the outdoors.
  • Elephant Rocks State ParkOpens in a new window – Discover the unique geological formations that resemble a herd of elephants at this national park. Hike along the trails that navigate between these massive boulders, perfect for a fun day of exploration and adventure. Climbing atop the rocks rewards you with stunning vistas of the surrounding scenery.
  • Fort Davidson State Historic SiteOpens in a new window – Dive into the rich history of the Civil War at this historic fort. Walk through the preserved grounds and learn about the battles that took place here. The informative displays and reenactments provide a fascinating glimpse into the past, making it a worthwhile visit for history enthusiasts.

5 tips for savvy savings when booking a hotel in Junction City

  1. Book for the cheapest times: The most affordable time to visit Junction City is during January, February, and December, when hotel prices tend to be lower. For those looking to explore the area's key historical landmarks and cultural attractions, a stay of at least 2 to 3 days is recommended. This duration allows visitors to fully enjoy the recreational areas and picturesque lakes that offer great value for money. Traveling on a budget during these months could provide an excellent opportunity to experience the rich history and natural beauty of Junction City without breaking the bank.
  2. Look for last-minute deals on Hotels.com: To explore hotel deals in Junction City, you may discover discounted rates in the DealsOpens in a new window or Last-Minute DealsOpens in a new window sections on Hotels.com, especially as your travel date approaches. Consider enabling email alerts or push notifications to stay informed about flash sales and last-minute promotions, ensuring you won't miss opportunities to save. Additionally, the Smart ShoppingOpens in a new window feature in the app allows you to compare room rates and amenities, helping you find the best options. With these tools, you’re more likely to catch price drops or new availability for a budget-friendly getaway.
  3. Be flexible with dates: Prices can fluctuate based on factors like the hotel's location, star rating, and the time of year, so being flexible with your travel dates might help you save on your stay in a Junction City hotel. If you’re seeking something unique, boutique hotels can provide a more personalized experience and possibly better value. When you book through Hotels.com, we’ll inform you whether the price for your chosen dates is above or below the average. If the price tends to be on the higher end, we’ll recommend more affordable dates, which could help you find a better deal.
  4. Consider your location: Hotels near the city center usually tend to be more expensive, but thanks to Junction City's great public transportation options, you might discover a more affordable independent hotel a bit farther out that still has good access. For those interested in exploring alternative, less crowded neighborhoods or even lesser-known nearby towns, there’s often excellent value to be found. Opting for these alternative destinations could lead to a more genuine and budget-friendly experience.
  5. Become a Member: Join our membership for free and unlock exclusive savings on your next stay in Junction City! Enjoy discounted rates at over 100,000 hotels worldwide, specifically available to our members. As you progress through the membership tiers, you’ll gain access to amazing perks, including complimentary room upgrades (subject to availability) and special discounts on food and beverages at select VIP Access properties. Don’t miss out on these fantastic benefits—sign up today and start planning your perfect getaway!

Best time to go to Junction City

Junction City experiences its lowest average temperature in January, at 33.3°F (0.7°C), while July is the hottest month, with an average temperature of 78.1°F (25.6°C). April is usually the wettest month. May to July are the peak travel months in Junction City, attracting a higher number of tourists. During this peak period, the weather is mostly sunny, accompanied by light rainfall. On the other hand, January, February, and December tend to be quieter times to visit, marked by light rainfall and mostly sunny conditions.

Keep exploring